miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161443045|gb|EX581151.1|EX581151 GTTATTTTCCAAGAAAAAGTTGATTCAACGGACCCTTTGCAGCAAAATACTACTCCCTCCGTCCCAAAATAAGTGTCTCA
AGCTTAGTACAACTTTGCACTAGAGCTAGTACAAAGTTGAGACACTTATTTTAAGACGGAGAGAGTACAACACATCATTG
TGTATGCAGTGGCCTTGGCAAATTTGCCATCGTATCCGGATTCTCTACATGTTTAGAGCCATCCATTCCATCTCCACCGT
CACCTCCCCCGACTCGGTGTGCTGCAGCTTCAGGGAAACCTCCTGCTTCACCTTGCCTCCGGTCACCATGACAGCGCTGT
CGGCGGTTAGAGCGTTGTCACCGGACTTGAGCCACCGGCCGATCTGTATGTCACCGAGCAGCTCTGGATCTCCAAACGAT
GCTGCCGCATTGATCATGGGCTGCAGGTCGATCTCGGCCTCCCCCATCAGGTCGTCTTTGGAAACCATATCATGGTCCAA
CACTTGCAGCTTCAGAGGCCCGTACTTCTGAGCAACAGAGAGCTTGAGTTCTTCATTCCAGACGGGGTTCAGGTTTCCTT
TGATCACTGAAGTCTGTGCTTTCTGTTGTCCGAGGGTCAAG




Most similar to sp|Q9FVJ3|AGD12_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating
           protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1
          Length = 337

 Score =  182 bits (462), Expect = 1e-45
 Identities = 85/129 (65%), Positives = 105/129 (81%)
 Frame = -2

Query: 600 LTLGQQKAQTSVIKGNLNPVWNEELKLSVAQKYGPLKLQVLDHDMVSKDDLMGEAEIDLQ 421
           LTLGQQKAQ++V+K NLNPVWNEEL LSV   YG +KLQV D+D  S DD+MGEAEID+Q
Sbjct: 207 LTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQ 266

Query: 420 PMINAAASFGDPELLGDIQIGRWLKSGDNALTADSAVMVTGGKVKQEVSLKLQHTESGEV 241
           P+I +A +FGDPE+ GD+QIG+WLKS DNAL  DS + +  GKVKQEV +KLQ+ ESGE+
Sbjct: 267 PLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGEL 326

Query: 240 TVEMEWMAL 214
            +EMEW+ L
Sbjct: 327 ELEMEWLPL 335